This page describes available methods for restructuring an
AbstractCBS object.
*append()
- Appends one AbstractCBS to another.
*extractChromosomes() /
*extractChromosome()
- Extracts an AbstractCBS with the specified chromosomes.
*extractSegments() /
*extractSegment()
- Extracts an AbstractCBS with the specified segments.
*extractRegions() /
*extractRegion()
- Extracts an AbstractCBS with the specified regions
each of a certain size, where a region is defined as a
connected set of segments.
*dropRegions() /
*dropRegion()
- Drops specified regions and returns an AbstractCBS
without them.
*dropChangePoint() /
*mergeTwoSegments()
- Drops a change point by merging two neighboring segments
and recalculates the statistics for the merged segment
before returning an AbstractCBS.
*dropChangePoints()
- Drops zero or more change points
and recalculates the segment statistics
before returning an AbstractCBS.
*mergeThreeSegments()
- Merges a segment with its two flanking segments
and recalculates the statistics for the merged segment
before returning an AbstractCBS.
All of the above methods are implemented for CBS and
PairedPSCBS objects.
For more information see AbstractCBS.